Bioinformatics for DNA Sequence Analysis

D. Posada, Ed.

Humana Press (2009)

Computational sequence analysis is no longer, if ever it was, the exclusive preserve of specialist bioinformaticians. BLAST, multiple sequence alignment, and phylogeny inference are as much a part of the core skill-set as PCR and SDS- PAGE and just as reliant on the availability of tried and tested protocols. This book sensibly concentrates almost exclusively on DNA, though the chapter on BLAST includes a very helpful primer on the PAM and BLOSUM protein similarity matrices. Inevitably, the range of tools included is not comprehensive. Whole-genome alignment is shoe-horned into an otherwise excellent chapter on multiple sequence alignment using MAFFT. But, I discovered several new ones that I might use (e.g. DataMonkey). The target audience seems to vary, some chapters assuming familiarity with working in a command-line environment, others restricted to web-based tools. However, I can imagine using chapters of this book in my own teaching of MSc Bioinformatics students or advanced undergraduates.

David Studholme, John Innes Centre

£68.99pp. 354ISBN 978-1-58829-910-9